MyGenome LOVD - This database is for training purposes only
AXIN1 (axin 1)
LOVD v.3.0 Build 30 [
Current LOVD status
]
Log in
Curator:
Johan T. den Dunnen
View all genes
View AXIN1 gene homepage
View graphs about the AXIN1 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene AXIN1
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene AXIN1
View all variants in gene AXIN1
Full data view for gene AXIN1
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene AXIN1
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene AXIN1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene AXIN1
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
The AXIN1 gene homepage
General information
Gene symbol
AXIN1
Gene name
axin 1
Chromosome
16
Chromosomal band
p13.3
Imprinted
Unknown
Genomic reference
NG_012267.1
Transcript reference
NM_003502.3
,
NM_181050.2
,
XM_005255607.2
,
XM_005255608.2
,
XM_005255609.2
,
XM_005255610.2
Associated with diseases
Caudal duplication anomaly
,
Hepatocellular carcinoma
Citation reference(s)
-
Curators (1)
Johan T. den Dunnen
Total number of public variants reported
296
Unique public DNA variants reported
50
Individuals with public variants
35
Hidden variants
25
Date created
November 30, -0001
Date last updated
September 28, 2016
Version
AXIN1:160928
Graphical displays and utilities
Graphs
Graphs displaying summary information of all variants in the database
»
UCSC Genome Browser
Show variants in the UCSC Genome Browser (
full view
,
compact view
)
Ensembl Genome Browser
Show variants in the Ensembl Genome Browser (
full view
,
compact view
)
NCBI Sequence Viewer
Show distribution histogram of variants in the
NCBI Sequence Viewer
Links to other resources
External URL
List of LSDBs for this gene
The reference LOVD for this gene, if available
HGNC
HGNC:903
Entrez Gene
8312
PubMed articles
AXIN1
OMIM - Gene
603816
OMIM - Diseases
Caudal duplication anomaly
Hepatocellular carcinoma
Active transcripts
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
ID
Chr
Name
NCBI ID
NCBI Protein ID
Variants
00020777
16
transcript variant 2
NM_181050.2
NP_851393.1
296
00020778
16
transcript variant 1
NM_003502.3
NP_003493.1
296
00037415
16
transcript variant X2
XM_005255608.2
XP_005255665.1
-
00037416
16
transcript variant X3
XM_005255609.2
XP_005255666.1
-
00037417
16
transcript variant X1
XM_005255607.2
XP_005255664.1
-
00037418
16
transcript variant X4
XM_005255610.2
XP_005255667.1
-
Powered by
LOVD v.3.0
Build 30
LOVD software ©2004-2024
Leiden University Medical Center