All screenings for gene APC

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Template: Template(s) used to detect the sequence variant; DNA (genomic DNA), RNA (cDNA) or protein
All options:

DNA
RNA = RNA (cDNA)
protein
? = unknown

Technique: technique(s) used to identify the sequence variant.
All options:

? = unknown
ARMS = amplification refractory mutation system
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
ASO = allele-specific oligo hybridisation
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
COBRA = Combined Bisulfite Restriction Analysis
CSCE = Conformation Sensitive Capillary Electrophoresis
CSGE = Conformation Sensitive Gel Electrophoresis
ddF = dideoxy Fingerprinting
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
DSCA = Double-Strand DNA Conformation Analysis
DSDI = Detection Small Deletions and Insertions
EMC = Enzymatic Mismatch Cleavage
expr = expression analysis
FISH = Fluorescent In-Situ Hybridisation
FISHf = fiberFISH
HD = HeteroDuplex analysis
HPLC = High-Performance Liquid Chromatography
IEF = IsoElectric Focussing
IHC = Immuno-Histo-Chemistry
Invader = Invader assay
MAPH = Multiplex Amplifiable Probe Hybridisation
MAQ = Multiplex Amplicon Quantification
MCA = Melting Curve Analysis, high-resolution (HRMA)
microscope = microscopic analysis (karyotype)
microsat = microsatellite genotyping
minigene = expression minigene construct
MIP = Molecular Inversion Probe amplification
MIPsm = singele molecule Molecular Inversion Probe amplification
MLPA = Multiplex Ligation-dependent Probe Amplification
MLPA-ms = Multiplex Ligation-dependent Probe Amplification, methylation specific
MS = mass spectrometry
Northern = Northern blotting
NUC = nuclease digestion (RNAseT1, S1)
OM = optical mapping
PAGE = Poly-Acrylamide Gel-Electrophoresis
PCR = Polymerase Chain Reaction
PCRdd = PCR, digital droplet
PCRdig = PCR + restriction enzyme digestion
PCRh = PCR, haloplex
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRms = PCR, methylation sensitive
PCRq = PCR, quantitative (qPCR)
PCRrp = PCR, repeat-primed (RP-PCR)
PCRsqd = PCR, semi-quantitative duplex
PE = primer extension (APEX, SNaPshot)
PEms = primer extension, methylation-sensitive single-nucleotide
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
PTT = Protein Truncation Test
RFLP = Restriction Fragment Length Polymorphisms
RT-PCR = Reverse Transcription and PCR
RT-PCRq = Reverse Transcription and PCR, quantitative
SBE = Single Base Extension
SEQ = SEQuencing (Sanger)
SEQb = bisulfite SEQuencing
SEQp = pyroSequencing
SEQms = sequencing, methylation specific
SEQ-ON = next-generation sequencing - Oxford Nanopore
SEQ-NG = next-generation sequencing
SEQ-NG-RNA = next-generation sequencing RNA
SEQ-NG-H = next-generation sequencing - Helicos
SEQ-NG-I = next-generation sequencing - Illumina/Solexa
SEQ-NG-IT = next-generation sequencing - Ion Torrent
SEQ-NG-R = next-generation sequencing - Roche/454
SEQ-NG-S = next-generation sequencing - SOLiD
SEQ-PB = next-generation sequencing - Pacific Biosciences
SNPlex = SNPlex
Southern = Southern blotting
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = fluorescent SSCA (SSCP)
STR = Short Tandem Repeat
TaqMan = TaqMan assay
Western = Western blotting
- = not applicable

Tissue: tissue type used for analysis

Remarks: remarks regarding the screening like WGS (whole genome sequencing), WES (whole exome sequencing, gene panel (incl. a list of genes analysed), etc.

How to query this table

All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.

Operator	Column type	Example	Matches
	Text	Arg	all entries containing 'Arg'
space	Text	Arg Ser	all entries containing 'Arg' and 'Ser'
\|	Text	Arg\|Ser	all entries containing 'Arg' or 'Ser'
!	Text	!fs	all entries not containing 'fs'
^	Text	^p.(Arg	all entries beginning with 'p.(Arg'
$	Text	Ser)$	all entries ending with 'Ser)'
=""	Text	=""	all entries with this field empty
=""	Text	="p.0"	all entries exactly matching 'p.0'
!=""	Text	!=""	all entries with this field not empty
!=""	Text	!="p.0"	all entries not exactly matching 'p.0?'
combination	Text	*\|Ter !fs	all entries containing '*' or 'Ter' but not containing 'fs'
	Date	2020	all entries matching the year 2020
\|	Date	2020-03\|2020-04	all entries matching March or April, 2020
!	Date	!2020-03	all entries not matching March, 2020
<	Date	<2020	all entries before the year 2020
<=	Date	<=2020-06	all entries in or before June, 2020
>	Date	>2020-06	all entries after June, 2020
>=	Date	>=2020-06-15	all entries on or after June 15th, 2020
combination	Date	2019\|2020 <2020-03	all entries in 2019 or 2020, and before March, 2020
	Numeric	23	all entries exactly matching 23
\|	Numeric	23\|24	all entries exactly matching 23 or 24
!	Numeric	!23	all entries not exactly matching 23
<	Numeric	<23	all entries lower than 23
<=	Numeric	<=23	all entries lower than, or equal to, 23
>	Numeric	>23	all entries higher than 23
>=	Numeric	>=23	all entries higher than, or equal to, 23
combination	Numeric	>=20 <30 !23	all entries with values from 20 to 29, but not equal to 23

Some more advanced examples:

Example	Matches
Asian	all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian	all entries containing 'Asian' but not containing 'Caucasian'
Asian\|African !Caucasian	all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"	all entries containing 'South Asian', but not containing 'South East Asian'

To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.

5271 entries on 53 pages. Showing entries 1 - 100.

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Screening ID	Individual ID	Template	Technique	Tissue	Remarks	Variants found	Owner
0000003193	00003275	DNA	SEQ-NG-I	-	-	1	Christopher Watson
0000003199	00003280	DNA	SEQ-NG-I	-	-	1	Christopher Watson
0000003207	00003288	DNA	SEQ-NG-I	-	-	1	Christopher Watson
0000011619	00011703	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011620	00011704	DNA	SEQ	?	screen APC gene (index patient)	1	Elke Holinski-Feder
0000011621	00011705	DNA	SEQ	?	screen APC gene (index patient)	1	Elke Holinski-Feder
0000011622	00011706	DNA	PTT;RT-PCR;SSCA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011623	00011707	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011624	00011708	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011625	00011709	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011626	00011710	DNA	MLPA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011627	00011711	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011628	00011712	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011629	00011713	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011630	00011714	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011631	00011715	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011632	00011716	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011633	00011717	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011634	00011718	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011635	00011719	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011636	00011720	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011637	00011721	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011638	00011722	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011639	00011723	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011640	00011724	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011641	00011725	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011642	00011726	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011643	00011727	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011644	00011728	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011645	00011729	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011646	00011730	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011647	00011731	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011648	00011732	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011649	00011733	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011650	00011734	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011651	00011735	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011652	00011736	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011653	00011737	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011654	00011738	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011655	00011739	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011656	00011740	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011657	00011741	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011658	00011742	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011659	00011743	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011660	00011744	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011661	00011745	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011662	00011746	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011663	00011747	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011664	00011748	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011665	00011749	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011666	00011750	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011667	00011751	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011668	00011752	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011669	00011753	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011670	00011754	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011671	00011755	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011672	00011756	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011673	00011757	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011674	00011758	DNA	SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011675	00011759	DNA	PTT;RT-PCR;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011676	00011760	DNA;RNA	RT-PCR;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011677	00011761	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011678	00011762	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011679	00011763	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011680	00011764	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011681	00011765	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011682	00011766	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011683	00011767	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011684	00011768	DNA;RNA	RT-PCR;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011685	00011769	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011686	00011770	DNA	RT-PCR;PTT;SSCA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011687	00011771	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011688	00011772	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011689	00011773	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011690	00011774	DNA	RT-PCR;PTT;SSCA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011691	00011775	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011692	00011776	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011693	00011777	DNA	RT-PCR;PTT;SSCA;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011694	00011778	DNA	RT-PCR;PTT;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011695	00011779	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011696	00011780	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011697	00011781	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011698	00011782	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011699	00011783	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011700	00011784	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011701	00011785	DNA	SEQ	?	screen APC gene (index patient)	1	Elke Holinski-Feder
0000011702	00011786	DNA	DGGE;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011703	00011787	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011704	00011788	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011705	00011789	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011706	00011790	DNA	PTT;RT-PCR;SSCA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011707	00011791	DNA	MLPA;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011708	00011792	DNA	PTT;RT-PCR;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011709	00011793	DNA	PTT;RT-PCR;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011710	00011794	DNA	PTT;RT-PCR;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011711	00011795	DNA	SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011712	00011796	DNA	RT-PCR;PTT;SEQ	?	screen APC gene (index patient)	1	Stefan Aretz
0000011713	00011797	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011714	00011798	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz
0000011715	00011799	DNA	RT-PCR;PTT;SEQ	?	test known APC variant (relative)	1	Stefan Aretz

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Global Variome shared LOVD

APC (adenomatous polyposis coli)