Full data view for gene APC


Information The variants shown are described using the NM_000038.5 transcript reference sequence.

20 entries on 1 page. Showing entries 1 - 20.
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Effect     

Exon     

Exon_old     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Predicted     

Type/DNA     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

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Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - - - - Unknown ? - - - - DNA SEQ ? screen APC gene (index patient) FAP1 - German HNPCC Consortium - Munich - - - Germany - - - no (pedigree) - 1 Elke Holinski-Feder
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Fostira et al. 2010 - - Germline ? - - - - DNA MLPA, SEQ ? screen APC gene (index patient) FAP1 - Greece, Athens, Molecular Diagnostics Laboratory - - - Greece - - - yes (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T codon 805, CGA --> TGA - APC_000057 - PubMed: Dobbie et al. 1996 - - Germline ? - - - - DNA PTT, RT-PCR, SSCA, SEQ ? screen APC gene (index patient) FAP1 - Switzerland, Basel, Human Genetics, Department of Research, University Clinics - - - Switzerland - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Ruiz-Ponte et al. 2001 - - Unknown ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - Spain, Santiago de Compostela, Unidad de Medicina Molecular, Universidad de Santiago de Compostela - - - Spain - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Aretz et al. 2006 - - Germline ? - - - - DNA SEQ leukocytes screen APC gene (index patient) FAP1 - - - F - Germany - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Friedl and Aretz 2005 - - Germline ? - - - - DNA SEQ leukocytes screen APC gene (index patient) FAP1 - - - M - Germany - - - yes (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Friedl and Aretz 2005 - - Germline ? - - - - DNA SEQ leukocytes test known APC variant (relative) FAP1 - - - F - Germany - - - yes (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Friedl and Aretz 2005 - - Unknown ? - - - - DNA SEQ leukocytes screen APC gene (index patient) FAP1 - - - M - Germany - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Friedl and Aretz 2005 - - Germline ? - - - - DNA SEQ leukocytes screen APC gene (index patient) FAP1 - - - F - Germany - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - Carli Tops (unpublished) - - De novo ? - - - - DNA SEQ leukocytes screen APC gene (index patient) FAP1 - - - - - Netherlands - - - ? - 1 Carli Tops
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Rivera et al. 2010 - - Germline ? - - - - DNA SEQ - screen APC gene (index patient) FAP1 - Spain, Madrid, Human Genetics Group, Human Cancer Genetics Programme, National Spanish Cancer Research Centre - - - Spain - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Kim et al. 2005 - - Unknown ? - - - - DNA RT-PCR, PTT, SEQ - screen APC gene (index patient) FAP1 - Korea, Seoul, Korean Polyposis Registry, Laboratory of Cell Biology, Cancer Research Institute and Cancer Research Center, Seoul National University College of Medicine - - - Korea, South (Republic) - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Gómez-Fernández et al. 2009 - - Germline ? - - - - DNA SSCA, SEQ - screen APC gene (index patient) FAP1 - Spain, Santiago de Compostela, Fundación Pública Galega de Medicina Xenómica (FPGMX)-SERGAS, Grupo de Medicina Xenómica (GMX)-USC, CIBERER - - - Spain - - - yes (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Plawski et Slomski 2008 - - Unknown ? - - - - DNA MLPA, SSCA, SEQ - screen APC gene (index patient) FAP1 - Poland, Poznan, Institute of Human Genetics, Polish Academy of Sciences - - - Poland - - - no (pedigree) - 1 Stefan Aretz
+/+ 18 15B c.2413C>T r.(?) p.(Arg805*) nonsense substitution Parent #1 - pathogenic g.112173704C>T g.112838007C>T 2413C>T - APC_000057 - PubMed: Lagarde et al. 2010 - - Unknown ? - - - - DNA SEQ ? screen APC gene (index patient) FAP1 - Centre de Recherche en Cancérologie de Marseille, INSERM UMR891, Marseille, France - - - France - - - no - 1 Stefan Aretz
+/+ 18 - c.2413C>T r.(?) p.(Arg805*) - substitution Parent #1 - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - - - - Germline - - - - - DNA SEQ - - - - - - - - Germany - - - - - 1 Andreas Laner
+/. - - c.2413C>T r.(?) p.Arg805* - - Unknown ACMG pathogenic g.112173704C>T g.112838007C>T - - APC_000057 ACMG grading: PVS1,PP5,PM4; polyposis coli (AFAP) at age 48; father CRC at age 45, sister CRC at age 35y; reported in Dobbie 1996. J Med Genet 33: 274 - - rs587779783 Germline - - - - - DNA SEQ-NG - - - - - - M - Germany - - - - - 1 Andreas Laner
+/. - - c.2413C>T r.(?) p.(Arg805Ter) - - Unknown - pathogenic g.112173704C>T g.112838007C>T APC(NM_000038.6):c.2413C>T (p.R805*) - APC_000057 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - - c.2413C>T r.(?) p.(Arg805Ter) - - Unknown - pathogenic g.112173704C>T g.112838007C>T APC(NM_000038.6):c.2413C>T (p.R805*) - APC_000057 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
+/. - - c.2413C>T r.(?) p.(Arg805Ter) - - Unknown - pathogenic g.112173704C>T g.112838007C>T - - APC_000057 - PubMed: Jiang 2022 - - Germline/De novo (untested) - 1/486 cases - - - DNA SEQ-NG - 81-gene panel cancer, colon 367372 PubMed: Jiang 2022 analysis 486 colorectal cancer patients F - China - - - - - 1 Johan den Dunnen
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