Full data view for gene APC


Information The variants shown are described using the NM_000038.5 transcript reference sequence.

28 entries on 1 page. Showing entries 1 - 28.
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Effect     

Exon     

Exon_old     

AscendingDNA change (cDNA)     

RNA change     

Protein     

Predicted     

Type/DNA     

Allele     

Classification method     

Clinical classification     

DNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Template     

Technique     

Tissue     

Remarks     

Disease     

ID_report     

Reference     

Remarks     

Gender     

Consanguinity     

Country     

Population     

Age at death     

VIP     

Data_av     

Treatment     

Panel size     

Owner     
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C - - APC_000489 low penetrant risk allele for colorectal cancer? - - rs1801166 Germline ? - - - - DNA SEQ ? screen APC gene (index patient) FAP1 - German HNPCC Consortium - Munich - - - Germany - - - yes (pedigree) - 1 Elke Holinski-Feder
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C - - APC_000489 low penetrant risk allele for colorectal cancer? - - rs1801166 Unknown ? - - - - DNA SEQ ? test known APC variant (relative) FAP1 - German HNPCC Consortium - Munich - - - Germany - - - no (pedigree) - 1 Elke Holinski-Feder
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C - - APC_000489 low penetrant risk allele for colorectal cancer? - - rs1801166 Unknown ? - - - - DNA SEQ ? test known APC variant (relative) FAP1 - German HNPCC Consortium - Munich - - - Germany - - - no (pedigree) - 1 Elke Holinski-Feder
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Frayling et al. 1998 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, Oxford, Tumor Genetics Group, Nuffield Department of Clinical Medicine, Wellcome Trust Centre for Human Genetics - M - United Kingdom (Great Britain) - - - yes (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Frayling et al. 1998 - rs1801166 De novo ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, Oxford, Tumor Genetics Group, Nuffield Department of Clinical Medicine, Wellcome Trust Centre for Human Genetics - M - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Frayling et al. 1998 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, Oxford, Tumor Genetics Group, Nuffield Department of Clinical Medicine, Wellcome Trust Centre for Human Genetics - F - United Kingdom (Great Britain) - - - yes (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Frayling et al. 1998 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, Oxford, Tumor Genetics Group, Nuffield Department of Clinical Medicine, Wellcome Trust Centre for Human Genetics - F - United Kingdom (Great Britain) - - - yes (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Lamlum et al. 2000 - rs1801166 De novo ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Lamlum et al. 2000 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Lamlum et al. 2000 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 low penetrant risk allele for colorectal cancer? PubMed: Lamlum et al. 2000 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 - PubMed: Lamlum et al. 2000 - rs1801166 Germline ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C E1317Q - APC_000489 - PubMed: Lamlum et al. 2000 - rs1801166 De novo ? - - - - DNA SSCA, SEQ ? screen APC gene (index patient) FAP1 - United Kingdom, London, Molecular and Population Genetics Laboratory, Imperial Cancer Research Fund - - - United Kingdom (Great Britain) - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Parent #1 - benign g.112175240G>C g.112839543G>C - - APC_000489 - - - - Unknown ? - - - - DNA SEQ ? screen APC gene (index patient) FAP1 - - - - - (Germany) - - - ? - 8 Elke Holinski-Feder
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C - - APC_000489 - PubMed: Aceto et al. 2005 - - Germline ? - - - - DNA HD, PTT, SSCA, DHPLC - screen APC gene (index patient) FAP1 - Italy, Chieti, Department of Oncology and Neurosciences, University G. D'Annunzio - - - Italy - - - no (pedigree) - 1 Stefan Aretz
-/- 18 15G c.3949G>C r.(?) p.(Glu1317Gln) missense substitution Unknown - benign g.112175240G>C g.112839543G>C - - APC_000489 - PubMed: Plawski et Slomski 2008 - - Unknown ? - - - - DNA MLPA, SSCA, SEQ - screen APC gene (index patient) FAP1 - Poland, Poznan, Institute of Human Genetics, Polish Academy of Sciences - - - Poland - - - no (pedigree) - 1 Stefan Aretz
?/- 18 - c.3949G>C r.(?) p.(Glu1317Gln) - - Parent #1 - VUS g.112175240G>C g.112839543G>C - - APC_000489 - Thibodeau lab (Mayo Clinic) - - Germline - - - - - DNA SEQ-NG-I blood - Healthy/Control - - gene panel study on controls - - United States - - - data for MLH1, MLH3, MSH2, MSH3, MSH6, MUTYH, PMS2 in the LOVD Insight database - 2 Melissa DeRycke
?/- 18 - c.3949G>C r.(?) p.(Glu1317Gln) - - Parent #1 - VUS g.112175240G>C g.112839543G>C - - APC_000489 - Thibodeau lab (Mayo Clinic) - - Germline - - - - - DNA SEQ-NG-I blood - CRC - - gene panel study on colon cancer cases - - United States - - - data for MLH1, MLH3, MSH2, MSH3, MSH6, MUTYH, PMS2 in the LOVD Insight database - 16 Melissa DeRycke
?/- 18 - c.3949G>C r.(?) p.(Glu1317Gln) missense - Unknown - VUS g.112175240G>C g.112839543G>C - - APC_000489 Polyphen benign - - - Germline - - - - - DNA SEQ - screen APC gene (index patient) polyposis - - - M - - - - - - - 1 Sira Moreno
?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - VUS g.112175240G>C g.112839543G>C APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - likely benign g.112175240G>C g.112839543G>C APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. 17 - c.3949G>C r.(?) p.(Glu1317Gln) - - Parent #1 - benign g.112175240G>C g.112839543G>C - - APC_000489 - contributed by Dept. of Dr Vaccaro - - Germline - - - - - DNA SEQ - - ? - contributed by Dept. of Dr Vaccaro - - - Argentina - - - - - 1 CEMIC - Genotyping - Angela Solano
-?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - likely benign g.112175240G>C g.112839543G>C APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - VUS g.112175240G>C g.112839543G>C APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - likely benign g.112175240G>C g.112839543G>C APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
?/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Parent #1 - VUS g.112175240G>C g.112839543G>C - - APC_000489 conflicting interpretations of pathogenicity; 1 heterozygous, no homozygous; Clinindb (India) PubMed: Narang 2020, Journal: Narang 2020 - rs1801166 Germline - 1/2795 individuals - - - DNA arraySNP - Infinium Global Screening Array v1.0 ? - PubMed: Narang 2020, Journal: Narang 2020 analysis 2794 individuals (India) - - India - - - - - 1 Mohammed Faruq
-/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - benign g.112175240G>C - APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
-/. - - c.3949G>C r.(?) p.(Glu1317Gln) - - Unknown - benign g.112175240G>C - APC(NM_000038.4):c.3949G>C (p.E1317Q), APC(NM_000038.5):c.3949G>C (p.(Glu1317Gln)), APC(NM_000038.6):c.3949G>C (p.E1317Q), APC(NM_001127510.1):c.39... - APC_000489 VKGL data sharing initiative Nederland - - - CLASSIFICATION record - - - - - - - - - - - - - - - - - - - - - - -
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